発表論文一覧
2008年
Horie, T., Kusakabe, T., and Tsuda, M.
Glutamatergic networks in the Ciona intestinalis larva.
J. Comp. Neurol. 508 (2), 249-263 (2008)
Horie, T., Sakurai, D., Ohtsuki, H., Terakita, A., Shichida, Y., Usukura,
J., Kusakabe, T., and Tsuda, M.
Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva.
J. Comp. Neurol. 509 (1), 88-102 (2008)
Sakai, T., Aoyama, M., Kusakabe, T., Tsuda, M., and Satake, H. (2008)
Functions of a GnRH receptor heterodimer of the ascidian Ciona intestinalis.
Acta Biol. Hung. 59 (Suppl.), 241-243.
2007年
Yoshida, R., Horie, T., Tsuda, M. and Kusakabe, T.G.
Comparative genomics identifies a cis-regulatory module that activates
transcription in specific subsets of neurons in Ciona intestinalis larvae.
Dev. Growth Differ. 49 (8), 657-667 (2007)
2006年
Sierro, N., Kusakabe, T., Park, K.-J., Yamashita, R., Kinoshita, K., and
Nakai, K.
DBTGR: a database of tunicate promoters and their regulatory elements Nucleic
Acids
Res. 34, D552-D555 (2006)
Aramaki, S., and Hatta, K.
Visualizing neurons one-by-one in vivo: optical dissection and reconstruction of neural networks with reversible fluorescent proteins.
Dev. Dyn. 235(8):2192-2199(2006)
Sayer, J.A., Otto, E.A., O'toole, J.F., Nurnberg, G., Kennedy, M.A., Becker, C., Hennies, H.C., Helou, J., Attanasio, M., Fausett, B.V., Utsch, B., Khanna, H., Liu, Y., Drummond, I., Kawakami, I., Kusakabe, T., Tsuda, M., Ma, L., Lee, H., Larson, R.G., Allen, S.J., Wilkinson, C.J., Nigg, E.A., Shou, C., Lillo, C., Williams, D.S., Hoppe, B., Kemper, M.J., Neuhaus, T., Parisi, M.A., Glass, I.A., Petry, M., Kispert, A., Gloy, J., Ganner, A., Walz, G., Zhu, X., Goldman, D., Nurnberg, P., Swaroop, A., Leroux, M.R., and Hildebrandt, F.
The centrosomal protein nephrocystin-6 is mutated in Joubert syndrome and
activates transcription factor ATF4
Nat. Genet. 38 (6), 674-681.(2006)
Takimoto, N., Kusakabe, T., Horie, T., Miyamoto, Y., and Tsuda, M. (2006)
Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65
and β-carotene 15,15'-monooxygenase homologues in Ciona intestinalis.
Photochem. Photobiol. 82 (6), 1468-1474.
Hatta, K., Tsujii, H., and Omura, T.
Cell tracking using a photoconvertible fluorescent protein.
Nat. Prot. 1(2):960-967(2006)
それ以前
Horie, T., Orii, H., and Nakagawa, M. (2005)
Structure of ocellus photoreceptors in the ascidian Ciona intestinalis
larva as revealed by an anti-arrestin antibody.
J. Neurobiol. 65 (3), 241-250 .
Shimizu, T., Yabe, T., Muraoka, O., Yonemura, S., Aramaki, S., Hatta, K., Bae, Y.K., Nojima, H., and Hibi, M.
E-cadherin is required for gastrulation cell movements in zebrafish.
Mech.Dev. 122(6):747-763(2005)
Barran, P.E., Roeske, R.W., Pawson, A.J., Sellar, R., Bowers, M.T., Morgan,
K., Lu, Z.-L., Tsuda, M., Kusakabe, T., and Millar, R.P.
Evolution of constrained GnRH ligand conformation and receptor sensitivity
J.Biol. Chem. 280 (46), 38569-38575 (2005)
Otto, E.A., Loeys, B., Khanna, H., Hellemans, J., Sudbrak, R., Fan, S.,
Muerb, U., O'Toole, J.F., Helou, J., Attanasio, M., Utsch, B., Sayer, J.A.,
Lillo, C., Jimeno, D., Coucke, P., De Paepe, A., Reinhardt, R., Klages,
S., Tsuda, M., Kawakami, I., Kusakabe, T., Omran, H., Imm, A., Tippens,
M., Raymond, P.A., Hill, J., Beales, P., He, S., Kispert, A., Margolis,
B., Williams, D.S., Swaroop, A., and Hildebrandt, F.
A novel ciliary IQ domain protein, NPHP5, is mutated in Senior-Loken syndrome (nephronophthisis with retinitis pigmentosa), and interacts with RPGR and calmodulin
Nat.Genet. 37 (3), 282-288 (2005)
Jiang, D., Tresser, J.W., Horie, T., Tsuda, M., and Smith, W.C.
Pigmentation in the sensory organs of the ascidian larva is essential for
normal behavior
J. Exp. Biol. 208 (Pt 3), 433-438 (2005)
Kusakabe, T., Yoshida, R., Ikeda, Y., and Tsuda, M.
Computational discovery of DNA motifs associated with cell type-specific
transcription in Ciona
Dev. Biol. 276 (2), 563-580 (2004)
Sakurai, D., Goda, M., Koumura, Y., Horie, T., Iwamoto, H., Ohtsuki, H.,
and Tsuda, M.
The role of pigment cells in the brain of ascidian larva
J. Comp. Neurol. 475 (1), 70-82 (2004)
Yoshida, R., Sakurai, D., Horie, T., Kawakami, I., Tsuda, M., and Kusakabe,
T.
Identification of neuron-specific promoters in Ciona intestinalis
Genesis 39 (2), 130-140 (2004)
Ando, H., Shi, Q., Kusakabe, T., Ohya, T., Suzuki, N., and Urano, A.
Localization of mRNAs encoding alpha and beta subunits of soluble guanylyl
cyclase in the brain of rainbow trout: comparison with the distribution
of neuronal nitric oxide synthase
Brain Res. 1013 (1), 13-29 (2004)
Ashida, A., Matsumoto, K., Ebrey, T.G., and Tsuda, M.
A purified agonist-activated G-protein coupled receptor: truncated octopus acid metarhodopsin
Zool. Sci. 21 (3), 245-250 (2004)
Kusakabe, T., Mishima, S., Shimada, I., Kitajima, Y., and Tsuda, M.
Structure, expression, and cluster organization of genes encoding gonadotropin-releasing
hormone receptors found in the neural complex of the ascidian Ciona intestinalis
Gene 322, 77-84 (2003)
Tsuda, M., Kusakabe, T., Iwamoto, H., Horie, T., Nakashima, Y., Nakagawa, M., and Okunou, K.
Origin of the vertebrate visual cycle. II. Visual cycle proteins are localized
in whole brain including photoreceptor cells of a primitive chordate Vision
Res. 43 (28), 3045-3053 (2003)
Inada, K., Horie, T., Kusakabe, T., and Tsuda, M.
Targeted knockdown of an opsin gene inhibits the swimming behaviour photoresponse
of ascidian larvae
Neurosci. Lett. 347 (3), 167-170 (2003)
Nakashima, Y., Kusakabe, T., Kusakabe, R., Terakita, A., Shichida, Y.,
and Tsuda, M.
Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate
J. Comp. Neurol. 460 (2), 180-190 (2003)
Tsuda, M., Sakurai, D., and Goda, M.
Direct evidence for the role of pigment cells in the brain of ascidian
larvae by laser ablation
J. Exp. Biol.,206(8), 1409-1417 (2003)
Tsuda, M., Kawakami, I., and Shiraishi, S.
Sensitization and habituation of the swimming behavior in ascidian larvae
to light
Zool. Sci. 20, 13-22 (2003)
Iwasa, T., Mishima, S., Watari, A., Ohkuma, M., Azuma, T., Kanehara, K.,
and Tsuda. M.
A novel G protein alpha-subunit in embryo of the ascidian, Halocynthia roretzi
Zool. Sci. 20, 141-152 (2003)
Yoshida, R., Kusakabe, T., Kamatani, M., Daitoh, M., and Tsuda, M.
Central nervous system-specific expression of G protein alpha-subunit isoforms
in the ascidian Ciona intestinalis
Zool. Sci. 19 (10), 1079-1088 (2002)
Nakagawa, M., Orii, H., Yoshida, N., Jojima, E., Horie, T., Yoshida, R., Haga , T., and Tsuda, M.
Ascidian arrestin (Ci-arr), the origin of the visual and nonvisual arrestins
of vertebrate Eur.
J. Biochem. 269 (21), 5112-5118 (2002)
Kusakabe, T., Nakashima, Y., Kusakabe, R., Takeo, H., Kawakami, I., Yoshida, R., Inada, K., Nakagawa, M., and Tsuda, M.
Phototransduction and visual cycle in the ascidian tadpole larva
J. Photosci. 9 (2), 37-40 (2002)
Horie,T., Nakagawa, M., Orii, H., and Tsuda, M.
Whole structure of the photoreceptors in the ascidian larva visualized by an antibody against arrestin (Ci-Arr)
J. Photosci. 9 (2), 272-274 (2002)
Satou, Y., Takatori, N., Fujiwara, S., Nishikata, T., Saiga, H., Kusakabe,
T., Shin-i, T., Kohara, Y., and Satoh, N.
Ciona intestinalis cDNA projects: EST analyses and gene expression profiles
during embryogenesis
Gene 287 (1-2), 83-96 (2002)
Nishioku, Y., Nakagawa, M., Tsuda, M., and Terazima, M.
Energetics and volume changes of the intermediates in the photolysis of
octopus rhodopsin at a physiological temperature
Biophys. J. 83 (2), 1136-1146 (2002)
Kawakami,I., Siraishi,I., and Tsuda, M.
Photoresponse and learning behavior of ascidian larvae, a primitive chordate,
to repeated stimuli of step-up and step-down of light
J. Biol. Physic. 28, 1-11(2002)
Okano, K., Oishi,T., Miyashita, Y., Moriya, T., Tsuda, M., Irie,T., Ueki,
N., and Seki, T.
Identification of 3,4-didehydroretinal Isomers in photosensitive melanophores
of the Xenopus tadpole tail fin
Zool. Sci. 19, 191-195 (2002)
Kusakabe, T., Yoshida, R., Kawakami, I., Kusakabe, R., Mochizuki, Y., Yamada,
L., Shin-i, T., Kohara, K., Satoh, N., Tsuda, M., and Satou, Y.
Gene expression profiles in tadpole larvae of Ciona intestinalis
Dev. Biol. 242 (2),188-203 (2002)
Kusakabe, T., Kusakabe, R., Kawakami, K., Satou, Y., Satoh, N., and Tsuda,
M.
Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis
FEBS Lett. 506 (1), 69-72 (2001)
Kuriyama, H., Nakagawa, M., and Tsuda, M.
Intracellular Ca2+ changes induced by in vitro ischemia in rat retinal
slices
Exp. Eye Res. 73 (3),365-374 (2001)
Nakagawa, M. Miyamoto,T., Kusakabe, R., Takasaki, S., Takao,T., Shichida ,Y., and Tsuda, M.
O-glycosylation of G-protein coupled receptor, octopus rhodopsin
FEBS Lett. 496, 19-24 (2001)
Nishioku,Y., Nakagawa, M., Tsuda, M., and Terazima,M.
A spectrally silent transformation in the photolysis of octopus rhodopsin:
a protein conformational change without any accompanying change of the
chromophore's absorption
Biophys. J. 80 (6), 2922-2927 (2001)
Kuriyama, H., Waki, M., Nakagawa, M., and Tsuda, M.
Involvement of oxygen free radicals and intracellular calcium dynamics
in experimental retinal ischemia
Ophthalmic Res. 33 (4),196-202 (2001)
Kusakabe, T. and Suzuki, N.
A cis-regulatory element essential for photoreceptor-specific expression of a medaka retinal guanylyl cyclase gene
Dev. Genes Evol. 211 (3), 145-149 (2001)
Tsuda, M., Ohkuma, M., Nakagawa, M., and Katagiri, Y.
Light regulated GnRH neurons in biological clock for reproduction in the
ascidin, Halocynthia roretzi
The Biology of Ascidians (Springer) pp 131-136 (2001)
Iwasa, T., Kanehara, K., Watari, A., Ohkuma, M., Nakagawa, M., and Tsuda, M.
Hererotrimc G protein alpha and beta subunit genes of the ascidian, Halocynthia
roretzi
The Biology of Ascidians (Springer) pp 147-152 (2001)
Tsuda,M., Kawakami,I., Miyamoto,T., Nakagawa,M., Shiraishi, S., and Gouda,M.
Photoresponse and habituation of swimming behavior of ascidian larvae, Ciona intestinalis
The Biology of Ascidians (Springer) pp 153-157 (2001)
Kusakabe, T.
Evolution of anural development in ascidians: role of muscle-specific differentiation
genes
The Biology of Ascidians (Springer) pp 225-229 (2001)
Hatta, K., N. Ankri, D. S. Faber and H.
Korn Slow inhibitory potentials in the teleost Mauthner cells.
Neuroscience 103, 561-579.(2001)