Publications (since 2002)
2019
New Assay Method Based on Raman
Spectroscopy for Enzymes Reacting with Gaseous Substrates
Y. K. Nakagawa, K. Nishikawa, S. Nakashima, S. Inoue,
T. Ohta, T. Ogura,
Y. Shigeta, K. Fukutani, T. Yagi and Y. Higuchi
Protein Science,
28, 663-670 (2019)
2018
High-resolution Structure of Dishevelled2-DIX
Domain Y27W Mutant
K. Yamanishi, Y. Sin, S. Terawaki, Y. Higuchi and N.
Shibata
Acta Crystallogr., F(2018)
Structural Changes in the
Trinuclear Copper Center upon the Reduction of Bilirubin Oxidase (BOD)
T. Tokiwa, M.
Shoji,V. Sladek, N. Shibata, Y. Higuchi, K. Kataoka, Y. Shigeta and F Misaizu
Molecules, 24, 76, (2018)
Redox-dependent Conformational
Changes of a Proximal [4Fe-4S] Cluster in Hyb-type [NiFe]-hydrogenase to
Protect the Active Site from O2
N. D. M.
Noor, H. Matsuura, K. Nishikawa, H. Tai, S. Hirota, J. Kim, J. Kang,
M. Tateno,
K-S. Yoon, S. Ogo, S. Kubota, Y. Shomura and Y. Higuchi
Chem. Commun., 54, 12385-12388 (2018)
Redox Potential-dependent
Formation of an Unusual His–Trp Bond in Bilirubin Oxidase
M. Akter, T. Tokiwa, M. Shoji, K. Nishikawa, Y. Shigeta, T Sakurai, Y. Higuchi,
K. Kataoka and N. Shibata
Chemistry - A
European Journal, 24 1-8 (2018)
Complete
Genome Sequence of a Moderately Thermophilic, Facultative Chemolithoautotrophic
Hydrogen-Oxidizing Bacterium, Hydrogenophilus
thermoluteolus TH-1
H.
Arai, Y. Shomura, Y. Higuchi and M. Ishii
Microbiology Resource Announcements,
7(6), e00857-18
(2018)
Direct
Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12
Catalysis.
N.
Shibata, Y. Sueyoshi, Y. Higuchi, and T. Toraya
Angew. Chem. Int. Ed., 57(26) 7830-7835 (2018)
Reactivation of standard [NiFe]-hydrogenase and bioelectrochemical
catalysis of proton reduction and hydrogen oxidation in a
mediated-electron-transfer system
S. Shiraiwa, K. So, Y. Sugimoto, Y. Kitazumi, O. Shirai, K. Nishikawa,
Y.Higuchi and K. Kano
A.
Oda, S.
Nagao,
M. Yamanaka, I. Ueda, N. Shibata, Y. Higuchi, and S. Hirota
Chem.
Asian J., 13, 964-967 (2018)
Structural basis of correct subunit assembly, aggregation, and
intracellular degradation of nylon hydrolase
S. Negoro, N.Shibata, Y.-H. Lee, I. Takehara, R. Kinugasa, K.
Nagai, Y. Tanaka, D. Kato, M. Takeo, Y. Goto and Y. Higuchi
Scientific Reports, 8:9725 (2018)
Comprehensive reaction mechanisms at and nearby the Ni‒Fe active
sites of [NiFe] hydrogenases
2017
Structural Basis of the Redox Switches in
the NAD+-reducing Soluble [NiFe]-hydrogenase
Y. Shomura, M. Taketa, H. Nakashima, H.
Tai, H. Nakagawa, Y. Ikeda, M. Ishii,
Y. Igarashi, H. Nishihara, K-S. Yoon, S.
Ogo, S. Hirota, Y. Higuchi
Science 357,
928-932 (2017)
Ni-elimination from the Active Site of
the Standard [NiFe]-hydrogenase upon Oxidation by O2
K. Nishikawa, S. Mochida, T. Hiromoto, N.
Shibata, and Y. Higuchi
J. Inorg. Biochem., 177, 435-437 (2017)
Equilibrium between Inactive Ready Ni-SIr and
Active Ni-SIa States of [NiFe] Hydrogenase Studied by Utilizing Ni-SIr-to-Ni-SIa Photoactivation
H. Tai, L. Xu, K. Nishikawa, Y. Higuchi and S. Hirota
Chem. Commun. 53, 10444-10447 (2017)
Formation and Carbon
Monoxidedependent Dissociation of Allochromatium
vinosum Cytochrome c乫 Oligomers
Using Domain-swapped Dimers
M. Yamanaka, M.
Hoshizumi, S. Nagao, R. Nakayama, N. Shibata Y. Higuchi and S. Hirota
Protein
Science, 26(3),
464-474 (2017)
Electrostatic Roles in Electron Transfer from [NiFe] hydrogenase to Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Y. Sugimoto,
Y. Kitazumi, O. Shirai, K.
Nishikawa, Y. Higuchi, M. Yamamoto and K. Kano
Biochim.
Biophys. Acta, 1865, 481-487 (2017)
Rational Design of Domain-Swapping-Based c-Type
Cytochrome Heterodimers by Using Chimeric Proteins
M. Zhang, T. Nakanishi, M. Yamanaka, S. Nagao, S.
Yanagisawa, Y. Shomura, N. Shibata, T. Ogura, Y. Higuchi, and S. Hirota
ChemBioChem, 18, 1–5 (2017)
Structural Basis for Ccd1
Autoinhibition in the Wnt Pathway through Homomerization of the DIX Domain
S. Terawaki, S. Fujita, T. Katsutani,
K. Shiomi, K. Keino-Masu, M. Masu, K. Wakamatsu, N. Shibata and Y. Higuchi
Scientific
Report, 7(1), 7739 (2017), July, DOI:
10.1038/s41598-017-08019-5
2016
Domain Swapping Oligomerization of
Thermostable c-type Cytochrome in E. coli Cells
Y. Hayashi, M. Yamanaka, S. Nagao,
H. Komori,
Y. Higuchi and S. Hirota
Scientific Report Feb 3;6:19334. (2016)
Synthesis and Reactivity of a
Water-soluble NiRu Monohydride Complex with a Tethered Pyridine Moiety
T. Matsumoto, K. Yoshimoto, C. Zheng, Y. Shomura, Y.
Higuchi, H. Nakai and S. Ogo
Chem. Lett. 45, 197–199
(2016)
Improved Purification,
Crystallization and Crystallographic Study of Hyd-2 Type [NiFe]-hydrogenase
from Citrobacter sp. S-77.
N. D. M. Noor, K Nishikawa, H. Nishihara, K-S. Yoon, S. Ogo and Y.
Higuchi
Acta Crystallogr. F (2016)
Bioelectrochemical analysis of thermodynamics of the
catalytic cycle and kinetics of the oxidative inactivation of oxygen-tolerant
[NiFe]-hydrogenase.
K. So, R. Hamamoto, R. Takeuchi, Y. Kitazumi,
O. Shirai, R. Endo, H. Nishihara, Y. Higuchi, K. Kano
J. Electroanal. Chem. 766, 152-161 (2016)
Crystal Structure of a Hypothetical Protein, TTHA0829 from Thermus thermophilus HB8, Composed of
Cystathionine--synthase (CBS) and Aspartate-kinase Chorismate-mutase tyrA
(ACT) Domains
M. Nakabayashi, N. Shibata, E. Ishido-Nakai, M.
Kanagawa, Y. Iio, H. Komori, Y. Ueda, N. Nakagawa, S. Kuramitsu and Y. Higuchi
Extremophiles, 20 (3), 275-282 (2016)
Direct Electron Transfer-Type Dual Gas Diffusion H2/O2 Biofuel Cells
K. So, Y.
Kitazumi, O. Shirai, K. Nishikawa, Y. Higuchi and K. Kano
J. Mat. Chem., 4, 8742-8749 (2016)
Exogenous Acetate Ion Reaches the Type II Copper Centre
in CueO Through the Water-Excretion Channel and Potentially Affects the
Enzymatic Activity
H. Komori, K. Kataoka, S.
Tanaka, N. Matsuda, Y. Higuchi and T. Sakurai
Acta Crystallogr., F (2016)
Photoactivation
of the Ni-SIr State to the Ni-SIa State in [NiFe] Hydrogenase: FT-IR Study on
the Light Reactivity of the Ready Ni-SIr State and
As-isolated Enzyme Revisited
H. Tai, L. Xu, S. Inoue, K. Nishikawa, Y. Higuchi and S. Hirota
Phys. Chem. Chem. Phys,
18 22025-22030 (2016)
Biochemical, Spectroscopic and
X-ray Structural Analysis of Deuterated Multicopper Oxidase CueO Prepared from
a New Expression Construct for Neutron Crystallography
M. Akter, C. Inoue, H. Komori,
N. Matsuda, T. Sakurai, K. Kataoka, Y. Higuchi and N. Shibata
Acta Crystallogr., F (2016)
Dual Gas-diffusion
Membrane- and Mediatorless Dihydrogen/Airbreathing Biofuel Cell Operating at
Room Temperature
H. Xia, K. So, Y. Kitazumi, O. Shirai, K. Nishikawa, Y.
Higuchi and K. Kano
Journal of Power Sources, 335, 105-112 (2016)
Structure and
Function of [NiFe] Hydrogenases
H. Ogata, W.
Lubitz and Y. Higuchi
J. Biochem. (Tokyo),
160(5), 251-258 (2016)
Mutations
Affecting the Internal Equilibrium of the Reaction Catalyzed by 6-aminohexanoate-dimer
Hydrolase
S. Negoro, Y. Kawashima, N. Shibata, T.
Kobayashi, T. Baba, Y-H. Lee, K. Kamiya, Y. Shigeta, K. Nagai, I. Takehara, D.
Kato, M. Takeo, and Y. Higuchi
FEBS Lett., 590(18), 3133-3143 (2016)
2015
Domain-swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights
into Domain Swapping of Cytochrome c
Family Proteins
S. Nagao, M. Ueda, H. Osuka, H.
Komori, H. Kamikubo, M. Kataoka, Y. Higuchi and S. Hirota
PLoS One, 10(4): e0123653 (2015)
Structural Basis for Cargo Binding and Autoinhibition of
Bicaudal-D1 by a Parallel Coiled-coil with Homotypic Registry
S. Terawaki, A. Yoshikan, Y. Higuchi, K. Wakamatsu
Biochem.
Biophys. Res. Commun. 460(2), 451-456 (2015)
FT-IR Characterization of the Light-Induced Ni-L2 and
Ni-L3 States of [NiFe] Hydrogenase from Desulfovibrio
vulgaris Miyazaki F
H. Tai, K. Nishikawa, S. Inoue,
Y. Higuchi and S. Hirota
J. Phys. Chem. B 119 (43), 13668–13674 (2015)
Crystallization and
Preliminary X-ray Diffraction Analysis of FAD-dependent Glucose Dehydrogenase
H. Komori, K.
Inaka, N. Furubayashi, M. Honda and Y. Higuchi
Acta Crystallogr. F71, 1017-1019 (2015)
"Newton's Cradle" Proton Relay with
Amide-imidic Acid Tautomerization in Inverting Cellulase Visualized by Neutron
Crystallography
A. Nakamura, T. Ishida, K. Kusaka, T. Yamada, S.
Fushinobu, I. Tanaka, S. Kaneko, K. Ohta, H. Tanaka, K. Inaka, Y. Higuchi, N.
Niimura, M. Samejima and K. Igarashi
Science Advances, Aug; 1(7):
e1500263 (2015)
Nanoscale Charge
Transport in Cytochrome c3/DNA Network: Comparative Studies between
Redox-active Molecules
H. Yamaguchi, D.-C. Che,
Y. Hirano, M. Suzuki, Y. Higuchi, and T. Matsumoto
Jap. J. of App. Physics 54, 095201-(1-4) (2015)
Molecular
architectures and functions of radical enzymes and their (re)activating
proteins.
N. Shibata and T. Toraya
J.
Biochem. (Tokyo) 158(4), 271-292 (2015)
Structural Insights into the O2 Reduction Mechanism of Multicopper Oxidase
H. Komori and Y.Higuchi
J. Biochem. (Tokyo) 158(4), 293-298 (2015)
Oligomerization Enhancement and Two Domain
Swapping Mode Detection for
Thermostable Cytochrome c-552 via the Elongation of the Major Hinge Loop
C. Ren, S. Nagao, M. Yamanaka, H. Komori, Y. Shomura, Y.
Higuchi and S. Hirota
Mol. Biosyst. 11(12), 218-221 (2015)
Domain-swapped
Cytochrome cb562 Dimer and Its Nanocage Encapsulating a Zn-SO4
Cluster in the Internal Cavity
T. Miyamoto, M. Kuribayashi, S. Nagao, Y. Shomura,
Y. Higuchi, and S. Hirota
Chem. Sci. 6, 7336-7342 (2015)
Hydrogens Detected by Subatomic Resolution Protein Crystallography
in a [NiFe] hydrogenase
H. Ogata, K. Nishikawa and W. Lubitz
Nature, 520, 571-574 (2015)
Crystallization
and Preliminary X-ray Analysis of the NAD+-reducing [NiFe] hydrogenase from Hydrogenophilus thermoluteolus TH-1
M. Taketa, H.
Nakagawa, M. Habukawa, H. Osuka, K. Kihira, H. Komori, N. Shibata, M. Ishii, Y. Igarashi, H. Nishihara, K-S. Yoon, S. Ogo, Y. Shomura and Y.
Higuchi
Acta Crystallogr. F71, 96–99 (2015).
Change in Structure and Ligand Binding
Properties of Hyperstable Cytochrome c555
from Aquifex aeolicus by Domain
Swapping
M. Yamanaka, S. Nagao, H. Komori, Y. Higuchi and S.
Hirota
Protein Science, 24, 366-375 (2015)
Refined Regio- and Stereoselective
Hydroxylation of L-Pipecolic Acid by the Engineered L-Proline-cis-4-Hydroxylase
K. Koketsu, K. Moriwaki, Y.
Shomura, M. Hayashi, S. Mitsuhashi, R. Hara, K. Kino and Y. Higuchi
Synthetic
Biology 4 (4), 383-392 (2015)
2014
Rational Design
of Heterodimeric Protein Using Domain Swapping for Myoglobin
Y.-W. Lin, S. Nagao, M. Zhang, Y. Shomura, Y. Higuchi, and S.
Hirota
Angew. Chem. Int. Ed. 54,
511-515 (2014).
Control of Transition between Ni-C and Ni-SIa
States in Catalytic Cycle of [NiFe] Hydrogenase by Redox State of its Proximal
Fe-S Cluster
H.
Tai, K. Nishikawa, M. Suzuki, Y. Higuchi, and S. Hirota
Angew. Chem. Int. Ed. 53, 13817-13820 (2014).
Gas-diffusion and Direct Electron Transfer-type
Bioanode for Hydrogen Oxidation with Oxygen-tolerant [NiFe]-hydrogenase as an
Electrocatalyst
K. So, Y. Kitazumi, O. Shirai, K.
Kurita, H. Nishihara, Y. Higuchi, K. Kano
Chemistry Lett. 43,
1575-1577 (2014).
Kinetic Analysis of
Inactivation and Enzyme Reaction of Oxygen-tolerant [NiFe]-hydrogenase at
Direct Electron Transfer-type Bioanode
K. So, Y. Kitazumi, O. Shirai, K. Kurita, H. Nishihara,
Y. Higuchi, and K. Kano
Bull. Chem. Soc. Jpn. 87, 1177–1185
(2014).
New Insights into the Catalytic Active Site Structure of
Multicopper Oxidase
H. Komori, R. Sugiyama, K. Kataoka, K. Miyazaki, Y. Higuchi
and T. Sakurai
Acta crysallogr.
D70,
772-779 (2014).
Catalytic
Cycle of Cytochrome-c3
Hydrogenase, a [NiFe]-enzyme, Deduced from the Structures of the Enzyme and the
Enzyme Mimic.
T. Yagi,
S. Ogo and Y. Higuchi
Int. J.
Hydrogen. Energy 39
(32), 18543-18550 (2014).
Crystallographic characterization of C-terminal coiled-coil region
of mouse Bicaudal-D1 (BICD1)
S. Terawaki, H. Ootsuka, Y. Higuchi and K. Wakamatsu
Acta
Crystallogr. F70, 1103-116 (2014).
Light-Driven Hydrogen Production by Hydrogenases and a
Ru-Complex inside a Nanoporous Glass Plate under Aerobic External Conditions
T. Noji, M. Kondo, T. Jin, T. Yazawa, H. Osuka, Y. Higuchi, M. Nango, S. Itoh and T. Dewa
J. Phys. Chem. Lett. 5 (14), 2402-2407 (2014).
Formation of Domain-Swapped Oligomer of Cytochrome c from
Its Molten Globule State Oligomer
M. S. Deshpande, P. P. Parui, H. Kamikubo, M. Yamanaka, S. Nagao, H. Komori, M. Kataoka, Y. Higuchi, and S. Hirota
Biochemistry 53 (28), 4696-703
(2014).
2013
Photosensitivity of the Ni-A State of [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F with Visible Light
H. Osuka, Y.
Shomura, H. Komori, N. Shibata, S. Nagao, Y. Higuchi, S. Hirota
Biochem.
Byophys. Res. Commun. 430, 284-288, (2013)
Studies on Hydrogenase
T. Yagi and
Y. Higuchi
Proc. Jpn. Acad. Ser. B 89, 16-33
(2013)
Crystal Structure of the CueO
Mutants at Glu506, the Key Amino Acid Located in the Proton Transfer Pathway
for Dioxygen Reduction
H. Komori, T. Kajikawa, K.
Kataoka, Y. Higuchi and T. Sakurai
Biochem.
Biophys. Res. Commun. 438, 686-690 (2013)
Crystallization
and X-ray Diffraction Analysis of Nylon Hydrolase (NylC) from Arthrobacter sp. KI72.
K. Nagai, K. Yasuhira, Y. Tanaka, D. Kato, M. Takeo, Y.
Higuchi, S. Negoro and丂N. Shibata
Acta Cryst. F 69, 1151-1154 (2013).
Structural
Aspects of [NiFe]-hydrogenases.
Y. Shomura,
Y. Higuchi
Reviews in Inorganic Chemistry 33, 173-192 (2013).
Formation of Oligomeric Cytochrome
c during Folding by Intermolecular Hydrophobic Interaction between N-
and C-Terminal 兛-Helices
P. P. Parui, M. S. Deshpande, S. Nagao, H. Kamikubo., H. Komori, Y. Higuchi, M. Kataoka and S. Hirota
Biochemistry 52(48), 8732-8744
(2013).
Complexes of
Ferriheme Nitrophorin 4 with Low-molecular Weight Thiol(ate)s Occurring in
Blood Plasma
C. He, K. Nishikawa, Ö. F. Erdem, E. Reijerse, H. Ogata, W.
Lubitz, M. Knipp
J. Inorg. Biochem. 122, 38-48 (2013)
Phase-diagram-guided
method for growth of a large crystal of glycoside hydrolase family 45 inverting
cellulase suitable for neutron structural analysis
A. Nakamura,
T. Ishida, S. Fushinobu, K. Kusaka, I. Tanaka, K. Inaka, Y. Higuchi, M. Masaki,
K. Ohta, S. Kaneko, N. Niimura, K. Igarashi and M. Samajima
J.
Synchrotron Rad. 20, 859-863 (2013).
Inhibitory
Activity of Filipendula ulmaria Constituents
on Recombinant Human Histidine Decarboxylase
Y. Nitta, H.
Kikuzaki, T. Azuma, Y. Ye, M. Sakaue, Y. Higuchi, H. Komori,
H. Ueno
Food. Chem. 138, 1551-1556, (2013)
2012
The Three-dimensional Structure
of Nylon Hydrolase and the Mechanism of nylon-6 Hydrolysis
S. Negoro1, N. Shibata., Y.
Tanaka ,K. Yasuhira, H. Shibata, H. Hashimoto, Y.-H. Lee, S. Oshima, R. Santa,
S. Oshima, K. Mochiji, Y. Goto, T. Ikegami, K. Nagai, D. Kato, M. Takeo and Y.
Higuchi
J. Biol.
Chem., 287, 5079-5090 (2012).
An O-Centered Structure of the
Trinuclear Copper Center in the Cys500Ser/Glu506Gln Mutant of CueO and
Structural Changes in Low to High X-Ray Dose Conditions
H. Komori, R. Sugiyama, K.
Kataoka, Y. Higuchi and T. Sakurai
Angew. Chem. Int. Ed., 51(8), 1861-1864 (2012).
Crystal
Structure Analysis of the Translation Factor RF3 (release factor 3).
K. Kihira, Y.
Shimizu, Y. Shomura, N. Shibata, M. Kitamura, A. Nakagawa, T. Ueda,K. Ochi,
Y.Higuchi
FEBS Letters 586, 3705-3709 (2012).
Purification,
Structural Basis for the Reaction Mechanism of S-carbamoylation of HypE by HypF
in the Maturation of [NiFe]-hydrogenases.
Y. Shomura,
Y. Higuchi
J. Biol. Chem. 287,
28409-28419 (2012).
Structural and Enzymatic
Characterization of BacD, An l-amino
Acid Dipeptide Ligase from Bacillus subtilis.
Y. Shomura, E. Hinokuchi, H.
Ikeda, A. Senoo, Y. Takahashi, J. Saito, H. Komori, N. Shibata, Y. Yonetani and
Y. Higuchi
Protein
Science
21, 707-716 (2012).
Domain
Swapping of the Heme and N-Terminal 兛-Helix in Hydrogenobacter thermophilus Cytochrome c552 Dimer.
Y. Hayashi,
S. Nagao, H. Osuka, H. Komori, Y. Higuchi, S. Hirota,
Biochemistry 51, 8608-8616 (2012).
Structural
and Oxygen Binding Properties of Dimeric Horse Myoglobin.
S. Nagao, H.
Osuka, T. Yamada, T. Uni, Y. Shomura, K. Imai, Y. Higuchi, S. Hirota
Dalton Transactions 41, 11378-11385 (2012).
Structural
Study Reveals Ser345 Determines Substrate Specificity on Human Histidine
Decarboxylase.
H. Komori, Y.
Nitta, H. Ueno, Y. Higuchi
J. Biol. Chem. 287,
29175-29183 (2012).
Purification,
Crystallization, and Preliminary X-ray Analysis of Human Histidine
Decarboxylase.
H. Komori, Y.
Nitta, H. Ueno, Y. Higuchi
Acta Crystallogr F68, 675-677 (2012).
2011
Structural Basis for a [4Fe-3S]
Cluster in the Oxygen-tolerant Membrane-bound
[NiFe]-hydrogenase.
Y. Shomura, K. Yoon, H. Nishihara
and Y. Higuchi
Nature 479, 253-257 (2011).
Crystallographic Characterization of the DIX Domain of
the Wnt Signalling Positive Regulator Ccd1.
S. Terawaki, K. Yano, T. Katsutani, K. Shiomi, K. Keino-Masu, M. Masu, Y. Shomura, H. Komori, N. Shibata and Y. Higuchi,
Acta Crystallogr. F67, 758-761 (2011).
Crystallization and Preliminary X-ray Diffraction Analysis of
Membrane-bound Respiratory [NiFe] Hydrogenase from Hydrogenovibrio marinus.
Y. Shomura, K. Hagiya, K. Yoon,
H. Nishihara and Y. Higuchi
Acta Crystallogr. F67, 827-829 (2011).
Crystallization and X-ray diffraction analysis of nylon
oligomer hydrolase (NylC) from Agromyces sp. KY5R.
K. Yasuhira, N. Shibata, Y. Tanaka, N. Kumagai, Y.
Tanaka, K. Nagai, D. Kato, M. Takeo, S. Negoro and Y. Higuchi
Acta
Crystallogr. F67, 892-895 (2011).
Role of p-Electron
Systems in Stabilization of the Oxidized Tetraheme Architecture in Cytochrome c3
Y. Takayama,. M. Taketa-Sato, H.
Komori, K. Morita, Su-Jin Kang, Y. Higuchi and H. Akutsu
Bull. Chem. Soc. Jpn. Vol. 84, No. 10, 1096-1101 (2011).
Molecular Dynamics Studies on Mutational Structures of a
Nylon-6 Byproduct-degrading Enzyme.
T. Baba, K. Kamiya, T. Matsui, N. Shibata, Y. Higuchi, T.
Kobayashi, S. Negoro and Y. Shigeta
Chem. Phys.
Lett. 507, 157-161 (2011).
How Coenzyme B12-dependent Ethanolamine Ammonialyase
Deals with Both Enantiomers of 2-Amino-1-propanol as Substrates:
Structure-based Rationalization.
N.
Shibata, Y. Higuchi and T. Toraya
Biochemistry 50, 591-598 (2011).
A Functional
Role of the Glycosylated N-terminal Domain of Chondromodulin-I.
J. Kondo, H.
Shibata, S. Miura, A. Yamakawa, K. Sato, Y. Higuchi, C. Shukunami and Y. Hiraki
J. Bone Miner. Metab. 29, 23-30 (2011).
Positively Charged Domain Located
Downstream of PIP Box, Together with TD Amino Acids within PIP Box, is
Important for CRL4Cdt2-mediated Proteolysis.
M. Michishita, A. Morimoto, T.
Ishii, H. Komori, Y. Shiomi, Y. Higuchi and H. Nishitani
Genes to Cells 16, 12-22 (2011).
2010
Purification, Crystallization and Preliminary X-ray
Analysis of the Dissimilatory Sulfite Reductase from Desulfovibrio vulgaris Miyazaki F.
H. Ogata, Y. Shomura, A.G. Agrawal, A.P. Kaur, W. Gärtner, Y. Higuchi and W. Lubitz,
Acta Crystallogr. F66, 1470-1472 (2010).
Crystallization and Preliminary X-ray Analysis of Dimeric
and Trimeric Cytochromes c from Horse Heart.
M. Taketa, H. Komori, Y. Hattori, S. Nagao, S. Hirota and
Y. Higuchi
Acta Crystallogr. F66, 1477-1479 (2010).
Crystal Structure Analysis of
Bacillus subtilis Ferredoxin-NADP+ Oxidoreductase and the
Structural Basis for Its Substrate Selectivity.
H. Komori, D. Seo, T. Sakurai
and Y. Higuchi
Protein
Science 19(12),
2279-2290 (2010).
Cytochrome c Polymerization
by Successive Domain Swapping at the C-terminal helix
S. Hirota, Y. Hattori, S. Nagao, M. Taketa, H. Komori, H.
Kamikubo, Z. Wang, I. Takahashi, S. Negi, Y. Sugiura, M. Kataoka and Y. Higuchi
Pro. Natl. Acad. Sci. 107(29), 12854-12859 (2010)
Crystal Structures of
Ethanolamine Ammonia-lyase complexed with Coenzyme B12 Analogs and
Substrates.
N. Shibata, H. Tamagaki, N.
Hieda, K. Akita, H. Komori, Y. Shomura, S. Terawaki, K. Mori, N. Yasuoka, Y.
Higuchi and T. Toraya
J. Biol.
Chem. 285(34), 26484-26493 (2010).
Expression, Crystallization and
Preliminary X-ray Crystallographic Study of Ethanolamine Ammonia-lyase from Escherichia
coli.
N. Shibata, H. Tamagaki, S. Ohtsuki, N. Hieda, K. Akita,
H. Komori, Y. Shomura,
S. Terawaki, T. Toraya, N. Yasuoka and Y. Higuchi
Acta Crystallogr. F66, 709-711 (2010).
Structure and Molecular
Evolution of Multicopper Blue
Proteins.
H. Komori and Y. Higuchi
BIOMOLECULAR CONCEPTS 1, 31-40 (2010).
Enzymatic Synthesis of Nylon-6
units in Organic Solvent Contained Low-water: Structural Requirement of
6-aminohexanoate-dimer Hydrolase for Efficient Amide Synthesis.
Y. Kawashima, K. Yasuhira,
J.
Mol. Cat. B 64, 81-88
(2010).
Crystallization and Preliminary
X-ray Studies of Ferredoxin-NADP+ Oxidoreductase Encoded by Bacillus subtilis yumC.
Acta
Crystallogr. F66, 301-303
(2010).
Crystal Structure of NADH:rubredoxin Oxidoreductase from Clostridium acetobutylicum: A Key
Component of the Dioxygen Scavenging System in Obligatory Anaerobes.
K. Nishikawa, Y. Shomura,
Proteins 78(4), 1066-1070 (2010).
Concerto Catalysis.Harmonising [NiFe] Hydrogenase and NiRu Model
Catalysts.
K. Ichikawa, K. Nonaka, T. Matsumoto,B. Kure, K-S. Yoon,
Y. Higuchi, T. Yagi and S. Ogo
Dalton
Transactions 39, 2993-2994
(2010).
Crystallization and Preliminary
X-ray Analysis of NADH:rubredoxin Oxidoreductase from Clostridium
acetobutylicum.
K. Nishikawa, Y. Shomura,
Acta
Crystallogr. F66, 23-25
(2010).
The PHCCEx Domain
of Tiam1/2 is a Novel Protein- and Membrane-binding Module.
S. Terawaki, K.
Kitano, T. Mori, Y. Zhai, Y. Higuchi, N. Itoh, T. Watanabe, K. Kaibuchi and T.
Hakoshima
EMBO J. 29, 236-250 (2010).
X-ray Crystallographic Analysis of the 6-aminohexanoate Cyclic
Dimer Hydrolase: Catalytic Mechanism and Evolution of an Enzyme Responsible for
Nylon-6 Byproduct Degradation.
K. Yasuhira, N. Shibata, G. Mongami, Y. Uedo, Y. Atsumi, Y.
Kawashima, A. Hibino, Y. Tanaka, Y-H. Lee, D. Kato, M. Takeo, Y. Higuchi and S.
Negoro
J.
Biol. Chem. 285, 1239-1248 (2010).
2009
[NiFe] Hydrogenases: Structural and Spectroscopic Studies
of the Reaction Mechanism.
H. Ogata, W. Lubitz and Y. Higuchi
Dalton Transactions 37, 7577-7587 (2009).
Structure Analysis of the Flavoredoxin from Desulfovibrio vulgaris Miyazaki F Reveals Key Residues that
Discriminate the Functions and Properties of the Flavin Reductase Family.
N. Shibata, Y. Ueda, D. Takeuchi, Y. Haruyama, S. Kojima, J. Sato,
Y. Niimura, M. Kitamura and Y. Higuchi
FEBS J. 276, 4840-4853 (2009).
Molecular
Design of Nylon-6 Byproduct Degrading Enzyme from Carboxylesterase
with b-lactamase Fold.
Y. Kawashima, T. Ohki, N. Shibata,
Y. Higuchi, Y. Wakitani, Y. Matsuura, Y. Nakata, M. Takeo, D. Kato and S.
Negoro
FEBS J. 276, 2547-2556 (2009).
Two Alternative Modes for Optimizing Nylon-6 Byproduct Hydrolytic
Activity from a Carboxylesterase with a 兝-lactamase Fold: X-ray
Crystallographic Analysis of Directly Evolved 6-aminohexanoate-dimer Hydrolase.
T. Ohki,
Protein Science 18, 1662-1673 (2009).
Zwitterionic Corroles: Regioselective Nucleophilic
Pyridination of a
Doubly Linked Biscorrole.
S. Hiroto, N. Aratani, N. Shibata, Y. Higuchi, T.
Sasamori, N. Tokitoh, H. Shinokubo and A. Osuka
Angew. Chem.
Int. Ed. 48, 2388-2390 (2009).
X-ray Structure of a Two-domain-type Laccase: A Missing
Link in the Evolution
of multi-copper proteins.
H. Komori, K.
Miyazaki and Y. Higuchi
FEBS Lett. 583,
1189-1195 (2009).
Crystallization
and Preliminary X-ray Diffraction Analysis of a Putative Two-domain-type
Laccase from a Metagenome.
H. Komori, K.
Miyazaki and Y. Higuchi
Acta crystallogr. F65,
264-266 (2009).
2008
Strategic Roles of Axial
Histidines in Structure Formation and Redox Regulation of Tetraheme Cytochrome c3.
Y. Takayama, N. D. Werbeck, H. Komori, K. Morita, K. Ozawa, Y.
Higuchi and H. Akutsu
Biochemistry, 47 (36),
9405–9415 (2008).
pH-Dependent Isotope Exchange and Hydrogenation Catalysed
by Water-soluble NiRu Complexes as Functional Models for [NiFe] hydrogenases.
B. Kure, T. Matsumoto, K. Ichikawa, S.
Fukuzumi, Y. Higuchi, T. Yagi and S. Ogo
Dalton Transactions, 4747 - 4755
(2008).
Crystallization and Preliminary
X-ray Crystallographic Study of Flavoredoxin from Desulfovibrio vulgaris
Miyazaki F.
Y. Ueda, N. Shibata, D. Takeuchi, M. Kitamura and Y. Higuchi
Acta crystallogr., F 64,
851-853 (2008).
Crystallization and Preliminary X-ray
Analysis of a Class II Release Factor RF3 from a Sulfate-reducing Bacterium.
K. Kihira, S. Numata, M. Kitamura,
J. Kondo, S. Terawaki, Y. Shomura, H. Komori, N. Shibata and Y. Higuchi
Acta crystallogr., F64,
622-624 (2008).
Hydrogen Bonds of DsrD Protein Revealed by Neutron Crystallography.
T. Chatake, Y. Higuchi, N. Mizuno,
J. Synchrotron Rad., 15, 277–280
(2008).
Metalation of Expanded Porphyrins: A Chemical Trigger Used To
Produce Molecular Twisting and Möbius Aromaticity.
Y. Tanaka, S. Saito, S. Mori, N. Aratani, H. Shinokubo, N.
Shibata, Y. Higuchi, Z. S. Yoon, K. S. Kim, S. B. Noh, J. K. Park, D. Kim and
A. Osuka
Angew. Chem. Int. Ed. 47, 681-684 (2008).
Crystallographic Characterization of the Membrane-targeting
Domains of the Rac-specific Guanine Nucleotide-exchange Factors Tiam1 and Tiam2.
S. Terawaki, K. Kitano and T. Hakoshima
Acta crystallogr. F64, 1039-1042 (2008).
Crystallographic Characterization of the Radixin FERM Domain
Bound to the Cytoplasmic tail of Membrane-type1 Matrix Metalloproteinase
(MT1-MMP).
S. Terawaki, K. Kitano, M. Aoyama and T. Hakoshima
Acta
crystallogr. F64, 911-913
(2008).
2007
Structure and Function
of the Engineered Multicopper Oxidase, CueO from Escherichia coli.
K.
Kataoka, H. Komori, Y. Ueki, Y. Konno, S. Tsujimura, Y. Higuchi, K. Kano and T.
Sakurai
J. Mol. Biol. 373, 141-152 (2007).
Crystal Structures of Hydrogenase Maturation Protein HypE in the
Apo and ATP-bound Forms.
Y. Shomura,
H. Komori, N. Miyabe, M. Tomiyama, N. Shibata and Y. Higuchi
J. Mol. Biol. 372, 1045-1054 (2007).
Nylon-oligomer Degrading Enzyme/substrate Complex: Catalytic
Mechanism of 6-aminohexanoate-dimer Hydrolase
S. Negoro, T.
Ohki, N. Shibata, K. Sasa, H. Hayashi, H. Nakano, K. Yasuhira, D. Kato, M.
Takeo and Y. Higuchi
J. Mol. Biol. 370, 142-156 (2007).
The DIX Domain of Dishevelled
Confers Wnt Signaling by Dynamic Polymerization.
T. Schwarz-Romond, M. Fiedler, N.
Shibata, P. Jonathan G. Butler, A. Kikuchi, Y. Higuchi and M. Bienz
Nat. Struct. Mol. Biol. 14, 484-492 (2007).
Crystallization and Preliminary
X-ray Crystallographic Studies of the Axin DIX Domain.
N. Shibata, Y. Tomimoto, T.
Hanamura, R. Yamamoto, M. Ueda, Y. Ueda, N. Mizuno, H. Ogata, H. Komori, Y. Shomura, M.
Kataoka, S. Shimizu, J. Kondo, H. Yamamoto, A. Kikuchi and Y. Higuchi
Acta
Crystallogr. F63, 529-531 (2007).
A Dinuclear Ni(mu-H)Ru Complex Derived from H2.
S. Ogo, R. Kabe, K. Uehara, B. Kure, T.
Nishimura, S. C. Menon, R. Harada, S. Fukuzumi, Y. Higuchi, T. Ohhara, T.
Tamada and R. Kuroki
Science 316, 585-587 (2007).
Determination of the Role of the Carboxyl-terminal Leucine-122 in
FMN-binding Protein by Mutational and Structural Analysis.
M. Kitamura, K. Terakawa, H.
Inoue, T. Hayashida, K. Suto, Y. Morimoto, N. Yasuoka, N. Shibata and Y.
Higuchi
J. Biochem., 141, 459-468 (2007).
Crystal Structure of CO-sensing Transcription
Activator CooA Bound to Exogenous Ligand Imidazole.
H. Komori, S. Inagaki, S. Yoshioka, S. Aono
and Y. Higuchi
J. Mol. Biol. 367, 864-871 (2007).
Human DNA Replication-related Element Binding
Factor (hDREF) Self-association via hATC Domain Is Necessary for Its Nuclear
Accumulation and DNA Binding.
D. Yamashita, H. Komori, Y. Higuchi, T. Yamaguchi, T. Osumi and F.
Hirose
J. Biol.
Chem. 282, 7563-7575 (2007).
Molecular Basis for Specificities of Reactivating Factors
For adenosylcobalamin
-dependent Diol and Glycerol Dehydratases.
H. Kajiura, K. Mori, N. Shibata and T. Toraya
FEBS J. 274, 5556-5566 (2007).
2006
Structure of the Cadherin-related Neuronal Receptor/Protocadherin-a First Extracellular Cadherin Domain Reveals Diversity across
Cadherin Families.
H. Morishita, M. Umitsu, Y. Murata, N.
Shibata, K. Udaka, Y. Higuchi, H. Akutsu, T. Yamaguchi, T. Yagi
and T. Ikegami
J. Biol.
Chem. 281, 33650-33663 (2006).
Crystallization and X-ray Diffraction
Analysis of
6-aminohexanoate-cyclic-dimer Hydrolase
from Arthrobacter sp. KI72.
Acta
Crystallogr. F62, 1209-1211 (2006).
High Fidelity Self-Sorting Assembling of meso-Cinchomeronimide
Appended meso-meso Linked Zn(II) Diporphyrins.
T. Kamada, N. Aratani, T. Ikeda, N. Shibata, Y. Higuchi, A.
Wakamiya, S. Yamaguchi, K. S. Kim, Z. S. Yoon, D. Kim and A. Osuka
J. Am. Chem. Soc. 128, 7670-7678 (2006).
Crystallization and Preliminary X-ray Analysis of CooA from Carboxydothermus hydrogenoformans.
H. Komori, K. Satomoto, Y. Ueda, N. Shibata, S. Inagaki, S.
Yoshioka, S. Aono and Y. Higuchi
Acta Crystallogr. F62, 471-473 (2006).
Roles of Charged Residues in pH-dependent Redox Properties of
Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F.
N. Yahata, K. Ozawa, Y. Tomimoto, K. Morita, H. Komori, H. Ogata,
Y. Higuchi and H. Akutsu
Biophysics 2, 45-56 (2006).
Mutational Analysis of 6-aminohexanoate-dimerhydrolase:
Relationship between Nylon Oligomer Hydrolytic and Esterolytic Activities.
T. Ohki, Y. Wakitani, M. Takeo, K. Yasuhira, N. Shibata, Y.
Higuchi and S. Negoro
FEBS Lett. 580, 5054-5058 (2006).
Redox-Dependent Interaction of
Cytochrome c3 with [NiFe] Hydrogenase from D. vulgaris Miyazaki F.
N. Yahata, K. Ozawa, A.
Nakahara, H. Ogata, Y. Higuchi and H. Akutsu
Biochemistry 45, 1653-1662 (2006).
A Single-Crystal ENDOR and Density Functional Theory Study of the
Oxidized States of the [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F.
M. van Gastel, M. Stein, M. Brecht, O. Schröder, F.
Lendzian, R. Bittl, H. Ogata, Y. Higuchi and W. Lubitz
J. Biol. Inorg. Chem. 11, 41-51
(2006).
Fes1p Acts as a Nucleotide Exchange Factor for
the Ribosome-associated
Molecular Chaperone Ssb1p.
Z, Dragovic, Y, Shomura, N, Tzvetkov, F. U,
Hartl and A. Bracher
Biol. Chem. 387, 1593-1600 (2006).
Molecular Chaperones of
the Hsp110 Family Act as Nucleotide Exchange Factors of Hsp70s.
Z. Dragovic, S. A. Broadleyv, Y. Shomura, A.
Bracher and F.U. Hartl
EMBO J. 25, 2519-2528
(2006).
Head Module control of Mediator Interactions.
Y. Takagi, G. Calero, H. Komori, J.A. Brown,
A.H. Ehrensberger, A. Hudmon, F. Asturias and R.D. Kornberg
Mol.
Cell 23,
355-364 (2006).
2005
X-ray Crystallographic Analysis of
6-Aminohexanoate-Dimer Hydrolase Molecular Basis for The Birth of A Nylon
Oligomer-degrading Enzyme.
S. Negoro, T. Ohki, N. Shibata, N. Mizuno, Y.
Wakitani, J. Tsurukame, K. Matsumoto, I. Kawamoto, M. Takeo and Y. Higuchi
J. Biol. Chem. 280, 39644-39652 (2005).
Release of a Damaged Cofactor from a Coenzyme
B12–dependent Enzyme: X-ray Structures of Diol Dehydratase-reactivating
Factor.
Structure 13, 1745-1754 (2005).
Crystallization and
X-ray Diffraction Analysis of 6-aminohexanoate-dimer Hydrolase from Arthrobacter sp.KI72.
T. Ohki, N. Mizuno,
Acta Crystallogr. F61, 928-930 (2005).
Activation Process of
[NiFe] Hydrogenase Elucidated by High-Resolution X-Ray Analyses: Conversion of
the Ready to the Unready State.
H. Ogata, S. Hirota,
A. Nakahara, H. Komori, N. Shibata, T. Kato, K. Kano and Y. Higuchi
Structure 13,
1635-1642 (2005).
Structure of a Conserved Hypothetical Protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 Å
Resolution: A Putative Member of the StAR-related Lipid-transfer (START) Domain
Super Family.
M. Nakabayashi, N. Shibata, H. Komori, Y. Ueda, H. Iino, A.
Ebihara, S. Kuramitsu and Y. Higuchi
Acta Crystallogr. F61, 1027-1031 (2005).
Ubiquitin Ligase Activity of Transcription Factor
IIH and Transcriptional Response to DNA Damage.
Y. Takagi, C. A. Masuda, W.-H. Chang, H.
Komori, D. Wang, T. Hunter, C. A. P. Joazeiro and R. D. Kornberg
Mol. Cell 18, 237-243 (2005).
An Engineered Chaperonin Caging a Guest Protein:
Structural Insights and Potential as a Protein Expression Tool.
M. Furutani, J. Hata, Y. Shomura, K. Itami, T.
Yoshida, Y. Izumoto, A. Togi, A. Ideno, T. Yasunaga, K. Miki and T.
Maruyama
Protein Science 14, 341-350 (2005).
Regulation of Hsp70 Function by HspBP1: Structural
Analysis Reveals an Alternate Mechanism for Hsp70 Nucleotide Exchange.
Y. Shomura, Z. Dragovic, H. C. Chang, N.
Tzvetkov, J.C. Young, J. L. Brodsky, V. Guerriero, F. U. Hartl and A. BracherR
Mol. Cell 17, 367-379 (2005).
Crystal Structure of Stilbene Synthase from Arachis hypogaea.
Y. Shomura, I. Torayama, D.Y. Suh, T. Xiang,
A. Kita, U. Sankawa and K. Miki Proteins 26, 803-806 (2005).
2004
Correlation Between the g Tensors and the Nonplanarity of
Porphyrin Rings in Desulfovibrio vulgaris
Miyazaki F Cytochrome c3,
Studied by Single Crystal EPR.
T. Saitoh, Y. Tachibana, Y. Higuchi, H Hori and H. Akutsu
Bull. Chem. Soc. Jpn. Vol. 77 No. 2
357-363 (2004).
Crystallization and Preliminary X-ray study of the two inhibitor
complexes of the catalytic domain of death-associated protein kinase
A. Yamakawa, H. Ogata, K. Morita, N.
Shibata, N. Andou, H. Sanuki, K. Yamada, T. Hioki, T. Ishii and Y. Higuchi
Acta Crystallogr. D60, 764-766 (2004).
Cloning and
Expression of the Enolase gene from Desulfovibrio
vulgaris (Miyazaki F).
M. Kitamura, Y. Takayama, S. Kojima, K. Kohono, H. Ogata,
Y. Higuchi, H. Inoue
Biochim.
Biophys. Acta 1676, 172-181 (2004).
Crystallization
and MAD Data Collection of High-Molecular Weight Cytochrome c from Desulfovibrio
vulgaris Miyazaki F.
N. Shibata,
K. Suto, E. Ichimura, K. Yoshimura, K. Muneo, S. Tomigami, Y. Morimoto, M.
Ogata, T. Yagi, Y. Higuchi and N. Yasuoka
Prot. Pep.
Let. 11, No.1, 93-96 (2004).
X-ray Induced
Reduction of the Crystal of High-Molecular Weight Cytochrome c Revealed by Microspectrophotometory.
M. Sato, N.
Shibata, Y. Morimoto, Y. Takayama, K. Ozawa, H. Akutsu, Y. Higuchi and N.
Yasuoka
J. Synchrotron Rad. 11,
113-116 (2004).
Hydration Structures in
Proteins and Neutron Diffraction Experiment on Dissimilatory Sulfite Reductase
D (DsrD).
T. Chatake, A. Ostermann, K.
Kurihara, F. G. Parak, N. Mizuno, G. Voordouw, Y. Higuchi, I. Tanaka and N.
Niimura
J. Synchrotron
Rad. 11, 72-75 (2004).
The N-terminal Domain of the Replication Initiator Protein RepE Is a Dimerization
Domain Forming a Stable Dimer.
A. Nakamura丆H.
Komori, G. Kobayashi丆A. Kita丆C. Wada and K. Miki
Biochem. Biophys. Res. Commun. 315, 10-15 (2004).
DNA Apophotolyase from Anacystis nidulans: 1.8
A structure, 8-HDF Reconstitution and X-ray-induced FAD Reduction
R. Kort丆H.
Komori丆S. Adachi丆K. Miki and A. Eker
Acta Crystallogr. D60, 1205-1213 (2004).
2003
Structural
Rationalization for the Lack of Stereospecificity in Coenzyme B12-dependent
Diol Dehydratase.
N Shibata, Y.
Nakanishi, M. Fukuoka, M. Yamanishi, N. Yasuoka and T. Toraya.
J. Biol.
Chem. 278, 22717-22725 (2003).
Crystallization and Preliminary Neutron Analysis of the
Dissimilatory Sulfite reductase D (DsrD) Protein from the Sulfate-reducing
Bacterium Desulfovibrio vulgaris.
T. Chatake, N. Mizuno, G. Voordouw, Y. Higuchi, S. Arai,
Acta Crystallogr. D59, 2306-2309 (2003).
X-ray Crystallographic Characterization and Phasing of a Fucose Specific
Lectin from Aleuria aurantia.
M. Fujihashi, D. H. Peapus, E. Nakajima, T. Yamada, J. Saito, A.
Kita, Y. Higuchi, A. Ando, N. Kamiya, Y. Nagata and K. Miki
Acta Crystallogr. D59,
378-380 (2003).
Single Crystal EPR Studies of
the Reduced Active Site of [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F.
S. Foerster, M. Stein, M. Brecht, H.
Ogata, Y. Higuchi and W. Lubitz
J. Am. Chem. Soc. 125, 83-93 (2003).
Three-dimensional
Crystal Structure of Dissimilatory Sulfite Reductase D (DsrD) Protein -
Possible Interaction with B- and Z-DNA by Its Winged-helix Motif.
N. Mizuno, G. Voordouw, K. Miki, A Sarai and Y. Higuchi
Structure 11, 1133-1140 (2003).
Role of the
Aromatic Ring of Tyr43 in Tetraheme Cytochrome c3 from Desulfovibrio
vulgaris Miyazaki F.
K. Ozawa, Y.
Takayama, F. Yasukawa, T. Ohmura, M. A. Cusanovich, Y., Tomimoto, H Ogata, Y.
Higuchi and H. Akutsu
Biophys.
J. 85, 3367-3374 (2003).
2002
Structural Studies of
the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial
Activation Site for Dihydrogen.
H. Ogata, Y. Mizoguchi,
J. Am. Chem. Soc. 124,
11628-11635 (2002).
Substrate-induced Conformational Change of a Coenzyme
B12-Dependent Enzyme: Crystal Structure of the Substrate-Free Form of Diol
Dehydratase.
N. Shibata, J. Masuda, Y. Morimoto, N. Yasuoka and T.
Toraya
Biochemistry 41, 12607-12617 (2002).
Crystal Structure of Coenzyme B12-Dependent Glycerol
Dehydratase in Complex with Cobalamin and Propane-1,2-Diol.
M. Yamanishi, M. Yunoki, T. Tobimatsu, H. Sato, J.
Matsui, A. Dokiya, Y. Iuchi, K. Oe, K. Suto, N. Shibata, Y. Morimoto, N.
Yasuoka and T. Toraya
Eur. J. Biochem. 269,
4484-4494 (2002).
Crystal Structure of Activated Ribulose-1,5-Bisphosphate
Carboxylase/Oxygenase from Green Alga Chlamydomonas reinhardtii Complexed with
2-Carboxyarabinitol-1,5- Bisphosphate.
E. Mizohata, H. Matsumura, Y. Okano, M. Kumei, H. Takuma,
J. Onodera, K. Kato, N. Shibata, T. Inoue, A. Yokota and Y. Kai:
J. Mol. Biol. 316, 677-689 (2002).